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Bug #2907

closed

MPI and GLOBUS WS-GRAM adaptor

Added by Scardaci Diego almost 13 years ago. Updated over 12 years ago.

Status:
Resolved
Priority:
High
Assigned To:
Category:
-
Target version:
-
Start date:
07/09/2012
Due date:
% Done:

100%

Estimated time:

Description

Dear All,
the MPI parameter "NUMBEROFPROCESSES" seems not working well.

Moreover, I'm not able to submit an MPI jobs through the GLOBUS WS-GRAM adaptor.

Cheers,
Diego Scardaci


Files

jsagajob.xml (2.23 KB) jsagajob.xml Scardaci Diego, 07/11/2012 03:57 PM
Actions #1

Updated by Schwarz Lionel almost 13 years ago

Diego, would it be possible for you to compare the JDL generated by JSAGA and the one generated by the Globus
client interface?

Thanks
Lionel

Actions #2

Updated by Scardaci Diego almost 13 years ago

Hi Lionel,
below the xml file generated by Globus. Do you know how can I get the xml file generated by JSAGA?

Cheers,
Diego

<job>
<factoryEndpoint xmlns:gram='http://www.globus.org/namespaces/2004/10/gram/job'
xmlns:wsa='http://schemas.xmlsoap.org/ws/2004/03/addressing'>

&lt;wsa:Address&gt;https://xn03.ctsf.cdacb.in:8443/wsrf/services/ManagedJobFactoryService&amp;lt;/wsa:Address&gt;
&lt;wsa:ReferenceProperties&gt;
&lt;gram:ResourceID&gt;PBS&lt;/gram:ResourceID&gt;
&lt;/wsa:ReferenceProperties&gt;
&lt;/factoryEndpoint&gt;

<executable>diego_mpi</executable>

<stdout>${GLOBUS_USER_HOME}/stdout</stdout>
<stderr>${GLOBUS_USER_HOME}/stderr</stderr>
<count>2</count>
<hostCount>2</hostCount>
<jobType>mpi</jobType>

<fileStageIn>
<transfer>
<sourceUrl>gsiftp://gridway.pd.infn.it:2811/home/globus/diego_mpi_sample/diego_mpi</sourceUrl>
<destinationUrl>gsiftp://xn03.ctsf.cdacb.in:2811/${GLOBUS_USER_HOME}/diego_mpi</destinationUrl>
</transfer>
</fileStageIn>

<fileStageOut>
<transfer>
<sourceUrl>gsiftp://xn03.ctsf.cdacb.in:2811/${GLOBUS_USER_HOME}/stdout</sourceUrl>
<destinationUrl>gsiftp://gridway.pd.infn.it:2811/home/globus/diego_mpi_sample/stdout</destinationUrl>
</transfer>
<transfer>
<sourceUrl>gsiftp://xn03.ctsf.cdacb.in:2811/${GLOBUS_USER_HOME}/stderr</sourceUrl>
<destinationUrl>gsiftp://gridway.pd.infn.it:2811/home/globus/diego_mpi_sample/stderr</destinationUrl>
</transfer>
</fileStageOut>

<fileCleanUp>
<deletion>
<file>file:///${GLOBUS_USER_HOME}/stdout</file>
</deletion>
<deletion>
<file>file:///${GLOBUS_USER_HOME}/stderr</file>
</deletion>
<deletion>
<file>file:///${GLOBUS_USER_HOME}/diego_mpi</file>
</deletion>
</fileCleanUp>

</job>

Actions #3

Updated by Scardaci Diego almost 13 years ago

Hi Lionel,
below the XML generated by JSAGA.

<job xmlns:ext="http://www.in2p3.fr/jsdl-extension" xmlns:spmd="http://schemas.ogf.org/jsdl/2007/02/jsdl-spmd" xmlns:posix="http://schemas.ggf.org/jsdl/2005/11/jsdl-posix" xmlns:jsdl="http://schemas.ggf.org/jsdl/2005/11/jsdl"><executable>/bin/sh</executable><argument>start.sh</argument><stdout>stdout</stdout><stderr>stderr</stderr><fileStageIn><transfer><sourceUrl>gsiftp://xn03.ctsf.cdacb.in:2811/tmp/d0eb500d-3bd1-47da-bbad-a141c74ae22b/start.sh</sourceUrl><destinationUrl>file:///${GLOBUS_USER_HOME}/start.sh</destinationUrl></transfer><transfer><sourceUrl>gsiftp://xn03.ctsf.cdacb.in:2811/tmp/d0eb500d-3bd1-47da-bbad-a141c74ae22b/diego_mpi</sourceUrl><destinationUrl>file:///${GLOBUS_USER_HOME}/diego_mpi</destinationUrl></transfer></fileStageIn><fileStageOut><transfer><sourceUrl>file:///${GLOBUS_USER_HOME}/stdout</sourceUrl><destinationUrl>gsiftp://xn03.ctsf.cdacb.in:2811/tmp/d0eb500d-3bd1-47da-bbad-a141c74ae22b/stdout</destinationUrl></transfer><transfer><sourceUrl>file:///${GLOBUS_USER_HOME}/stderr</sourceUrl><destinationUrl>gsiftp://xn03.ctsf.cdacb.in:2811/tmp/d0eb500d-3bd1-47da-bbad-a141c74ae22b/stderr</destinationUrl></transfer></fileStageOut><extensions><stageDirectory>gsiftp://xn03.ctsf.cdacb.in:2811/tmp/d0eb500d-3bd1-47da-bbad-a141c74ae22b</stageDirectory><preStageIn><transfer><sourceUrl>/home/diego/mpitest/start.sh</sourceUrl><destinationUrl>gsiftp://xn03.ctsf.cdacb.in:2811/tmp/d0eb500d-3bd1-47da-bbad-a141c74ae22b/start.sh</destinationUrl><append>false</append></transfer><transfer><sourceUrl>/home/diego/mpitest/diego_mpi</sourceUrl><destinationUrl>gsiftp://xn03.ctsf.cdacb.in:2811/tmp/d0eb500d-3bd1-47da-bbad-a141c74ae22b/diego_mpi</destinationUrl><append>false</append></transfer></preStageIn><postStageOut><transfer><sourceUrl>gsiftp://xn03.ctsf.cdacb.in:2811/tmp/d0eb500d-3bd1-47da-bbad-a141c74ae22b/stdout</sourceUrl><destinationUrl>/home/diego/mpitest/stdout</destinationUrl><append>false</append></transfer><transfer><sourceUrl>gsiftp://xn03.ctsf.cdacb.in:2811/tmp/d0eb500d-3bd1-47da-bbad-a141c74ae22b/stderr</sourceUrl><destinationUrl>/home/diego/mpitest/stderr</destinationUrl><append>false</append></transfer></postStageOut></extensions><jobType>mpi</jobType><count>4</count><hostCount>2</hostCount></job>

Cheers,
Diego

Actions #4

Updated by Scardaci Diego almost 13 years ago

maybe it's better for you have it in a file format. Attached.

Cheers,
Diego

Actions #5

Updated by Reynaud Sylvain over 12 years ago

  • Status changed from New to Resolved
  • Assigned To set to Reynaud Sylvain
  • % Done changed from 0 to 100

Element <factoryEndpoint> added to generated job description.

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